Molecular Diagnostics and Detection of Oomycetes on Fiber Crops.
Identifieur interne : 000118 ( Main/Exploration ); précédent : 000117; suivant : 000119Molecular Diagnostics and Detection of Oomycetes on Fiber Crops.
Auteurs : Tuhong Wang [République populaire de Chine] ; Chunsheng Gao [République populaire de Chine] ; Yi Cheng [République populaire de Chine] ; Zhimin Li [République populaire de Chine] ; Jia Chen [République populaire de Chine] ; Litao Guo [République populaire de Chine] ; Jianping Xu [République populaire de Chine, Canada]Source :
- Plants (Basel, Switzerland) [ 2223-7747 ] ; 2020.
Abstract
Fiber crops are an important group of economic plants. Traditionally cultivated for fiber, fiber crops have also become sources of other materials such as food, animal feed, cosmetics and medicine. Asia and America are the two main production areas of fiber crops in the world. However, oomycete diseases have become an important factor limiting their yield and quality, causing devastating consequences for the production of fiber crops in many regions. To effectively control oomycete pathogens and reduce their negative impacts on these crops, it is very important to have fast and accurate detection systems, especially in the early stages of infection. With the rapid development of molecular biology, the diagnosis of plant pathogens has progressed from relying on traditional morphological features to the increasing use of molecular methods. The objective of this paper was to review the current status of research on molecular diagnosis of oomycete pathogens on fiber crops. Our search of PubMed identified nearly 30 species or subspecies of oomycetes on fiber crops, among which the top three species were Phytophthora boehmeriae, Phytophthora nicotianae and Pythium ultimum. The gene regions that have been used for molecular identifications of these pathogens include the internal transcribed spacer (ITS) regions of the nuclear ribosomal RNA gene cluster, and genes coding for translation elongation factor 1α (EF-1α) and mitochondrial cytochrome c oxidase subunits I and II (Cox 1, Cox 2), etc. We summarize the molecular assays that have been used to identify these pathogens and discuss potential areas of future development for fast, specific, and accurate diagnosis of oomycetes on fiber crops.
DOI: 10.3390/plants9060769
PubMed: 32575466
PubMed Central: PMC7355704
Affiliations:
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Zhimin" sort="Li, Zhimin" uniqKey="Li Z" first="Zhimin" last="Li">Zhimin Li</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205</wicri:regionArea><wicri:noRegion>Changsha 410205</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Jia" sort="Chen, Jia" uniqKey="Chen J" first="Jia" last="Chen">Jia Chen</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Bast Fiber Crops and 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Chine</country><wicri:regionArea>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205</wicri:regionArea><wicri:noRegion>Changsha 410205</wicri:noRegion></affiliation></author><author><name sortKey="Gao, Chunsheng" sort="Gao, Chunsheng" uniqKey="Gao C" first="Chunsheng" last="Gao">Chunsheng Gao</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205</wicri:regionArea><wicri:noRegion>Changsha 410205</wicri:noRegion></affiliation></author><author><name sortKey="Cheng, Yi" sort="Cheng, Yi" uniqKey="Cheng Y" first="Yi" last="Cheng">Yi Cheng</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205</wicri:regionArea><wicri:noRegion>Changsha 410205</wicri:noRegion></affiliation></author><author><name sortKey="Li, Zhimin" sort="Li, Zhimin" uniqKey="Li Z" first="Zhimin" last="Li">Zhimin Li</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205</wicri:regionArea><wicri:noRegion>Changsha 410205</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Jia" sort="Chen, Jia" uniqKey="Chen J" first="Jia" last="Chen">Jia Chen</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205</wicri:regionArea><wicri:noRegion>Changsha 410205</wicri:noRegion></affiliation></author><author><name sortKey="Guo, Litao" sort="Guo, Litao" uniqKey="Guo L" first="Litao" last="Guo">Litao Guo</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205</wicri:regionArea><wicri:noRegion>Changsha 410205</wicri:noRegion></affiliation></author><author><name sortKey="Xu, Jianping" sort="Xu, Jianping" uniqKey="Xu J" first="Jianping" last="Xu">Jianping Xu</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205</wicri:regionArea><wicri:noRegion>Changsha 410205</wicri:noRegion></affiliation><affiliation wicri:level="4"><nlm:affiliation>Department of Biology, McMaster University, Hamilton, ON L8S 4K1, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Biology, McMaster University, Hamilton, ON L8S 4K1</wicri:regionArea><orgName type="university">Université McMaster</orgName><placeName><settlement type="city">Hamilton (Ontario)</settlement><region type="state">Ontario</region></placeName></affiliation></author></analytic><series><title level="j">Plants (Basel, Switzerland)</title><idno type="ISSN">2223-7747</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Fiber crops are an important group of economic plants. Traditionally cultivated for fiber, fiber crops have also become sources of other materials such as food, animal feed, cosmetics and medicine. Asia and America are the two main production areas of fiber crops in the world. However, oomycete diseases have become an important factor limiting their yield and quality, causing devastating consequences for the production of fiber crops in many regions. To effectively control oomycete pathogens and reduce their negative impacts on these crops, it is very important to have fast and accurate detection systems, especially in the early stages of infection. With the rapid development of molecular biology, the diagnosis of plant pathogens has progressed from relying on traditional morphological features to the increasing use of molecular methods. The objective of this paper was to review the current status of research on molecular diagnosis of oomycete pathogens on fiber crops. Our search of PubMed identified nearly 30 species or subspecies of oomycetes on fiber crops, among which the top three species were <i>Phytophthora boehmeriae, Phytophthora nicotianae</i> and <i>Pythium ultimum</i>. The gene regions that have been used for molecular identifications of these pathogens include the internal transcribed spacer (ITS) regions of the nuclear ribosomal RNA gene cluster, and genes coding for translation elongation factor 1α (<i>EF-1α</i>) and mitochondrial cytochrome c oxidase subunits I and II (<i>Cox 1, Cox 2</i>), etc. We summarize the molecular assays that have been used to identify these pathogens and discuss potential areas of future development for fast, specific, and accurate diagnosis of oomycetes on fiber crops.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">32575466</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>28</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Print">2223-7747</ISSN><JournalIssue CitedMedium="Print"><Volume>9</Volume><Issue>6</Issue><PubDate><Year>2020</Year><Month>Jun</Month><Day>19</Day></PubDate></JournalIssue><Title>Plants (Basel, Switzerland)</Title><ISOAbbreviation>Plants (Basel)</ISOAbbreviation></Journal><ArticleTitle>Molecular Diagnostics and Detection of Oomycetes on Fiber Crops.</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">E769</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.3390/plants9060769</ELocationID><Abstract><AbstractText>Fiber crops are an important group of economic plants. Traditionally cultivated for fiber, fiber crops have also become sources of other materials such as food, animal feed, cosmetics and medicine. Asia and America are the two main production areas of fiber crops in the world. However, oomycete diseases have become an important factor limiting their yield and quality, causing devastating consequences for the production of fiber crops in many regions. To effectively control oomycete pathogens and reduce their negative impacts on these crops, it is very important to have fast and accurate detection systems, especially in the early stages of infection. With the rapid development of molecular biology, the diagnosis of plant pathogens has progressed from relying on traditional morphological features to the increasing use of molecular methods. The objective of this paper was to review the current status of research on molecular diagnosis of oomycete pathogens on fiber crops. Our search of PubMed identified nearly 30 species or subspecies of oomycetes on fiber crops, among which the top three species were <i>Phytophthora boehmeriae, Phytophthora nicotianae</i> and <i>Pythium ultimum</i>. The gene regions that have been used for molecular identifications of these pathogens include the internal transcribed spacer (ITS) regions of the nuclear ribosomal RNA gene cluster, and genes coding for translation elongation factor 1α (<i>EF-1α</i>) and mitochondrial cytochrome c oxidase subunits I and II (<i>Cox 1, Cox 2</i>), etc. We summarize the molecular assays that have been used to identify these pathogens and discuss potential areas of future development for fast, specific, and accurate diagnosis of oomycetes on fiber crops.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Tuhong</ForeName><Initials>T</Initials><Identifier Source="ORCID">0000-0002-7442-2877</Identifier><AffiliationInfo><Affiliation>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gao</LastName><ForeName>Chunsheng</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cheng</LastName><ForeName>Yi</ForeName><Initials>Y</Initials><Identifier Source="ORCID">0000-0002-8609-3951</Identifier><AffiliationInfo><Affiliation>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Zhimin</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Jia</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Guo</LastName><ForeName>Litao</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Xu</LastName><ForeName>Jianping</ForeName><Initials>J</Initials><Identifier Source="ORCID">0000-0003-2915-2780</Identifier><AffiliationInfo><Affiliation>Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Biology, McMaster University, Hamilton, ON L8S 4K1, Canada.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>CAAS-ASTIP-2015-IBFC</GrantID><Agency>Chinese Academy of Agricultural Sciences</Agency><Country></Country></Grant><Grant><GrantID>2018YFD0201106</GrantID><Agency>National Key Research and Development Program of China Stem Cell and Translational Research</Agency><Country></Country></Grant><Grant><GrantID>CRDPJ 474638 - 14</GrantID><Agency>Natural Sciences and Engineering Research Council of Canada</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D016454">Review</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>06</Month><Day>19</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Plants 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Wang</name></noRegion><name sortKey="Chen, Jia" sort="Chen, Jia" uniqKey="Chen J" first="Jia" last="Chen">Jia Chen</name><name sortKey="Cheng, Yi" sort="Cheng, Yi" uniqKey="Cheng Y" first="Yi" last="Cheng">Yi Cheng</name><name sortKey="Gao, Chunsheng" sort="Gao, Chunsheng" uniqKey="Gao C" first="Chunsheng" last="Gao">Chunsheng Gao</name><name sortKey="Guo, Litao" sort="Guo, Litao" uniqKey="Guo L" first="Litao" last="Guo">Litao Guo</name><name sortKey="Li, Zhimin" sort="Li, Zhimin" uniqKey="Li Z" first="Zhimin" last="Li">Zhimin Li</name><name sortKey="Xu, Jianping" sort="Xu, Jianping" uniqKey="Xu J" first="Jianping" last="Xu">Jianping Xu</name></country><country name="Canada"><region name="Ontario"><name sortKey="Xu, Jianping" sort="Xu, Jianping" uniqKey="Xu J" first="Jianping" last="Xu">Jianping Xu</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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